Welcome to the Optibrium Community





Forgot login?
Register

Videos

Search


Pose Generation Interface

Friday, 16 June 2017 22:31
E-mail Print PDF
Matt Segall

This short video illustrates how StarDrop's universal Pose Generation Interface provides a seamless link between StarDrop and 3D docking and alignment models run on most major computational chemistry platforms.

This enables chemists to get feedback on their compound designs from 3D models in real time, while computational chemists can easily publish their validated docking and alignment models to StarDrop users via the Pose Generation Server.

To hear the narration, please increase your speaker volume.


Searching eMolecules from StarDrop

Friday, 04 November 2016 07:55
E-mail Print PDF
Matt Segall

This short video illustrates how a seamless link to eMolecules' comprehensive database of commercially available compounds helps to design new, high quality compounds that are synthetically accessible using building blocks that can be easily purchased.

To hear the narration, please increase your speaker volume.


Query Interface

Monday, 03 October 2016 15:46
E-mail Print PDF
Matt Segall

This short video illustrates how StarDrop's Query Interface provides a seamless link to your in-house databases, enabling you to create, share and run queries through a user-friendly interface, returning the data directly in StarDrop for analysis, visualisation and design.

To hear the narration, please increase your speaker volume.


Linking 2D and 3D SAR with the SeeSAR Module

Tuesday, 21 June 2016 17:18
E-mail Print PDF
Matt Segall

This short video illustrates how you can visualise the structure of protein-ligand complexes in the SeeSAR module, seamlessly linking 2- and 3-dimensional structure-activity relationships, to guide the design of potent, high quality compounds.

To hear the narration, please increase your speaker volume.


Introduction to P450 Module

Thursday, 11 June 2015 00:00
E-mail Print PDF
Matt Segall

This short movie gives an introduction to StarDrop's P450 module which enables you to quickly identify the regions of your molecules that are most vulnerable to metabolism by the major drug metabolising isoforms of cytochrome P450.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Introduction to Matched Series Analysis

Thursday, 11 June 2015 00:00
E-mail Print PDF
Matt Segall

This short movie gives an introduction to StarDrop's Matched Series Analysis which is part of the Nova module which searches databases of matched molecular series to identify chemical substitutions that are likely to improve target activity.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Introduction to Card View

Thursday, 09 October 2014 00:00
E-mail Print PDF
Matt Segall

This short video gives a brief introduction to StarDrop's Card View that provides a unique and intuitive approach to working with your compounds and data in the context of a drug discovery project.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


R-Group Analysis

Thursday, 30 January 2014 00:00
E-mail Print PDF
Edmund Champness

This short demo gives a quick introduction to how StarDrop's R-group analysis functionality can be used to explore the relationships between functional groups at different R-Group positions and a compound's properties. For more information on the scores which are in the example data set, take a look at the demo Compound prioritisation and selection.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Library Enumeration

Wednesday, 29 January 2014 00:00
E-mail Print PDF
Edmund Champness

Explore the virtual library design capability as part of StarDrop's Nova module, providing flexible and easy scaffold-based enumeration of a virtual library. As demonstrated in this short video, this allows drug discovery teams to rapidly explore new chemistry ideas.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Redesign to Reduce Toxicity Risk

Wednesday, 16 October 2013 15:29
E-mail Print PDF
Edmund Champness

In this demo we look at how it's possible to use the Derek Nexus module with StarDrop to guide the design of new analogues around a compound with predicted toxicity risks using StarDrop's interactive Design tool.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Addressing Toxicity in Compound Prioritisation and Selection

Wednesday, 16 October 2013 15:25
E-mail Print PDF
Edmund Champness

In this demo we're going to take a look at how toxicity predictions from the Derek Nexus module can be included in StarDrop's Probabilistic Scoring to intuitively balance the reductions of toxicity risk with requirements for a successful drug.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


torch3D

Wednesday, 16 October 2013 15:21
E-mail Print PDF
Edmund Champness

In this demo we take a look at how StarDrop's torch3D module can be used to compare the molecular fields of compounds with those of a know bioactive in order to assess their potential for biological activity. For more information on the models and scoring used within this demonstration, take a look at the video Compound prioritisation and selection.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Automatic Generation of New Chemistry Ideas

Wednesday, 16 October 2013 15:11
E-mail Print PDF
Edmund Champness

In this demo we take a look at how StarDrop's Nova plug-in module can be used to generate new compound ideas. Starting with three lead compounds you can see how it is possible to generate new ideas which are optimised to have a good balance of both target affinity and ADME properties. For an example of how the target affinity model was created, take a look at the Building a QSAR model demonstration.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Compound Prioritisation and Selection

Wednesday, 16 October 2013 14:59
E-mail Print PDF
Edmund Champness

In this demo we're going to take a look at how StarDrop can guide the prioritisation and selections of compounds using a combination of in vitro and in silico data. Using StarDrop's probabilistic scoring, data visualisation and selection tools you can see how we can select a diverse set of compounds with balanced properties and visualise this within a chemical space visualisation. The predictive models used in this demo are part of the ADME QSAR module.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Redesign to Resolve Metabolic Liabilities

Wednesday, 16 October 2013 14:20
E-mail Print PDF
Edmund Champness

In this demo we look at how it's possible to use the StarDrop P450 metabolism models to guide the design of new analogues around a compound with known metabolic liabilities.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


BIOSTER

Wednesday, 16 October 2013 14:04
E-mail Print PDF
Edmund Champness

This short demo introduces StarDrop's BIOSTER module. The BIOSTER module contains a unique compilation of over 20,000 precedented bioisostere and bioanalogue transformations that can be used by Nova to generate new compound ideas.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Building a QSAR Model

Wednesday, 16 October 2013 13:34
E-mail Print PDF
Edmund Champness

In this demo we use the Auto-Modeller to build a QSAR model of some measured data for target affinity. Using this new model we guide the design of a new compound using probabilistic scoring to consider the relative importance of potency alongside ADME properties and then the Glowing Molecule to help modify the existing compound to improve its overall balance of properties.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here


Introduction to data visualisation

Wednesday, 16 October 2013 12:19
E-mail Print PDF
Edmund Champness

This short demo introduces the different types of data visualisations that can be created within StarDrop, including scatter plots, box plots, histograms, radar charts, SAR tables and pie charts.

To hear the narration, please increase your speaker volume. If you cannot view YouTube please click here






Latest Forums

Read more >

Popular Downloads

Read more >